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Logistics & Warehousing Audit UAE 2025: Customs, Inventory & 3PL Compliance

Complete logistics audit guide for UAE warehouses, freight forwarders, and 3PL providers. Master inventory controls, customs compliance, bonded warehouse regulations, freight revenue recognition, and supply chain audit procedures.

Logistics & Warehousing Audit UAE 2025: Customs, Inventory & 3PL Compliance
O
Omar Al Shamsi
CPA, Logistics Audit Specialist
November 26, 2025
15 min read

The UAE logistics and warehousing sector, valued at AED 112 billion as major regional logistics hub, encompasses 8,500+ warehouses, 2,400+ freight forwarders, and 1,100+ third-party logistics providers operating under complex UAE Customs regulations, bonded warehouse requirements, and specialized inventory controls.

Warehouse Inventory Audit

Inventory Held for Third Parties

Warehousing companies typically store goods owned by clients (not warehouse owner):

Accounting Treatment: Goods NOT included in warehouse's inventory; maintained in memorandum records only

Audit Focus: Verify warehouse inventory (own goods for operations like packaging materials) separated from client inventory, test memorandum records, confirm physical segregation of client goods

Common Error: Client goods incorrectly included in warehouse's balance sheet inventory (overstates assets).

Physical Count Challenges

Warehouses present unique count difficulties:

  • Large volumes across multiple locations
  • High-value goods requiring security
  • Goods in transit (received but not yet entered system)
  • Goods staged for shipment (picked but not yet dispatched)

Audit Procedures:

  • Plan count timing to minimize goods movement
  • Attend physical count observation
  • Test count accuracy (recount sample items)
  • Verify cut-off (goods received December 31 vs. January 1)
  • Reconcile memorandum records to client confirmations

Inventory Valuation

For warehouse's own inventory (packaging, equipment):

  • Cost including freight and customs duties
  • FIFO or weighted average method
  • Assess obsolescence (old packaging materials)

Customs Compliance Audit

Import Documentation Verification

Key Customs Documents:

  • Customs declarations (import permits)
  • Commercial invoices
  • Packing lists
  • Bill of lading / airway bill
  • Certificates of origin (for preferential tariffs)
  • Duty payment receipts

Audit Procedures:

  • Sample import shipments
  • Verify customs declaration filed
  • Confirm duties paid
  • Test duty amounts (correct HS code and valuation)
  • Verify duties capitalized to inventory cost (not expensed)

Common Finding: Import duties expensed instead of added to inventory cost (understates inventory, overstates expenses).

Bonded Warehouse Compliance

Bonded warehouses store imported goods before customs duty payment:

Regulatory Requirements:

  • UAE Customs license required
  • Goods remain under customs custody
  • Duty paid when goods leave warehouse for UAE market
  • Re-export exempt from duty

Audit Considerations:

  • Verify bonded warehouse license current
  • Test bonded goods register (quantity, value, entry date)
  • Confirm goods not removed without customs clearance
  • Review customs inspection reports
  • Assess duty payment when goods cleared

Risk: Unauthorized removal from bonded warehouse creates customs violation and duty liability.

Freight Forwarding Revenue Recognition

Service Types and Revenue Timing

Freight Forwarding Services:

  • Ocean/air freight booking
  • Customs clearance
  • Documentation handling
  • Door-to-door delivery
  • Warehousing and consolidation

Revenue Recognition: When service performed (performance obligation satisfied)

Example Timing:

  • Freight service: When shipment delivered to destination
  • Customs clearance: When goods cleared and released
  • Warehousing: Over storage period (daily/monthly)

Principal vs. Agent Accounting

Critical distinction affecting revenue reporting:

Principal (Freight Forwarder Controls Service):

  • Record gross revenue (full freight charge)
  • Record gross cost (carrier cost)
  • Example: Revenue AED 10,000, Cost AED 7,000, Margin AED 3,000

Agent (Freight Forwarder Arranges Only):

  • Record net commission only
  • Example: Commission AED 3,000 (revenue), No cost recorded

Audit Assessment:

  • Review freight contracts and terms
  • Assess risk and control (who manages service?)
  • Verify accounting treatment (gross vs. net) appropriate
  • Test consistency across similar arrangements

Impact: Significantly affects reported revenue (though net income same).

3PL (Third-Party Logistics) Accounting

Complex Service Arrangements

3PL providers offer integrated logistics:

  • Warehousing
  • Inventory management
  • Order fulfillment
  • Transportation
  • Value-added services (kitting, labeling, returns)

Revenue Recognition Complexity: Multiple performance obligations delivered at different times

Audit Procedures:

  • Review 3PL contracts and service terms
  • Identify separate performance obligations
  • Verify revenue allocation methodology
  • Test billing accuracy
  • Assess unbilled revenue accruals (services performed but not yet invoiced)

Warehouse Management System (WMS) Audit

WMS Functionality:

  • Goods receipt tracking
  • Location management (bin/shelf tracking)
  • Picking and packing
  • Dispatch and shipping
  • Inventory reporting

Audit Procedures:

  • Test WMS to accounting system interface
  • Verify WMS controls (user access, approval workflows)
  • Review system-generated inventory reports
  • Test accuracy of WMS records vs. physical count
  • Assess data backup and disaster recovery

Common Issue: WMS inventory doesn't reconcile to accounting system; requires investigation and adjustment.

Transportation Cost Accounting

Owned Fleet vs. Subcontractors

Logistics companies may own trucks/vehicles or subcontract transport:

Owned Fleet:

  • Vehicles capitalized as fixed assets
  • Depreciation over useful life (typically 5-10 years)
  • Maintenance costs expensed
  • Fuel, insurance, Salik tolls expensed

Subcontractor Transport:

  • Transport cost expensed when service rendered
  • Verify subcontractor agreements
  • Test cost allocation to customer jobs

Audit Procedures:

  • Review fixed asset register for vehicles
  • Test depreciation calculation
  • Verify vehicle registration and insurance current
  • Sample transport jobs and verify cost allocation
  • Assess capitalization vs. expense (major repairs may be capitalized if extending useful life)

Customs Broker License Compliance

Freight forwarders providing customs clearance must:

  • Hold customs broker license
  • Employ licensed customs clearance agents
  • Maintain bonded facility (if handling customs goods)

Audit Verification: Confirm customs broker license valid, verify agent licenses current, review customs compliance history (penalties, violations).

Dangerous Goods Handling

Logistics companies handling hazardous materials face additional regulations:

Compliance Requirements:

  • Dangerous goods handling license
  • Trained and certified staff
  • Proper storage facilities (segregation, fire safety)
  • Documentation (MSDS - Material Safety Data Sheets)
  • Insurance coverage for hazardous cargo

Audit Consideration: Verify licenses in place, assess staff training records, review insurance coverage, check MSDS availability.

Cold Chain Compliance

For temperature-sensitive goods (pharmaceuticals, food):

Requirements:

  • Temperature-controlled warehousing and transport
  • Continuous temperature monitoring
  • Calibrated thermometers and data loggers
  • SOPs for temperature excursions
  • Validation certificates

Audit Procedures: Review temperature logs, verify equipment calibration, assess temperature excursion reports, confirm client notification procedures.

Common Logistics Audit Findings

1. Client Inventory Included in Books: Third-party goods incorrectly capitalized as warehouse asset

2. Import Duties Expensed: Customs duties not added to inventory cost

3. Revenue Timing Issues: Freight revenue recognized before delivery (premature)

4. Gross vs. Net Revenue Error: Agent transactions recorded gross (overstates revenue and expenses)

5. WMS Reconciliation Gaps: System inventory doesn't match books; reconciliations not performed

6. Expired Licenses: Bonded warehouse or customs broker license lapsed

7. Unbilled Revenue Not Accrued: Services performed in December but invoiced January; revenue understated

Free Zone Warehousing Considerations

Many UAE logistics companies operate from free zones:

Free Zone Benefits:

  • 0% import duty on goods stored in free zone
  • Simplified customs procedures
  • Re-export without duty
  • 100% foreign ownership

Audit Implications:

  • Verify free zone license current
  • Confirm goods physically located in free zone
  • Test customs declarations for goods entering/leaving free zone
  • Assess transfer pricing if intercompany transactions

Cargo Insurance and Claims

Logistics companies may provide insurance or be liable for cargo:

Liability Types:

  • Carrier liability (for goods in transit)
  • Warehouse liability (for stored goods)
  • Professional indemnity (errors and omissions)

Audit Procedures:

  • Verify insurance policies in place
  • Assess coverage limits adequate
  • Review claims history
  • Test claims receivable (insurance claims filed but not yet paid)
  • Verify provision for uninsured losses

Preparing for Logistics Audit

Customs Documentation: Import declarations, duty payment receipts, bonded warehouse register, customs broker license

Inventory Records: Memorandum records for client goods, own inventory count sheets, WMS reports

Revenue Documentation: Service contracts (freight, 3PL, warehousing), billing records, proof of delivery, unbilled revenue schedules

Transportation: Vehicle registration, insurance policies, fuel records, subcontractor agreements

Regulatory Licenses: Bonded warehouse license, customs broker license, dangerous goods permit (if applicable), free zone license

Frequently Asked Questions

What are the main audit risks in logistics and warehousing?

Primary risks include inventory discrepancies, customs compliance violations, revenue recognition complexities for freight forwarding, and potential related party transactions with shipping partners.

How frequently should logistics companies conduct physical inventory counts?

Best practice requires quarterly cycle counts for high-value items and annual full physical counts, with perpetual inventory systems providing real-time tracking and reconciliation capabilities.

Conclusion

Logistics and warehousing audits require specialized expertise in inventory controls for third-party goods, UAE Customs compliance, bonded warehouse regulations, freight forwarding revenue recognition (principal vs. agent), 3PL accounting, and WMS system controls. The combination of complex regulatory requirements, high transaction volumes, and multiple service delivery models makes logistics audits uniquely challenging.

As Ministry-approved auditors with extensive UAE logistics sector experience across warehousing operations, freight forwarders, 3PL providers, and customs-bonded facilities, Farahat & Co provides specialized audit services addressing inventory controls, customs compliance verification, revenue recognition analysis, and regulatory license compliance, ensuring comprehensive audits tailored to the logistics industry's unique requirements.

Important Disclaimer

The information provided in this article reflects the regulatory environment as of 2026. Laws and regulations in the UAE are subject to change. This content is for general information only and does not constitute professional legal or financial advice. We recommend consulting with a qualified auditor or legal advisor for your specific situation.

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